File Availability
| File Name |
Description |
Released Time |
Download |
| Test.fasta |
The test set of AnnoPRO. |
2023.10.11 |
 |
| Train.fasta |
The training set of AnnoPRO. |
2023.10.11 |
|
| Valid.fasta |
The valid set of AnnoPRO. |
2023.10.11 |
|
Code Availability
1. You can reach the code by GitHub at:
https://github.com/idrblab/AnnoPRO.git/
2. You can follow this way to install AnnoPro to your env:
or install from source code as following steps:
git clone https://github.com/idrblab/AnnoPRO.git
cd AnnoPRO
conda create -n annopro python=3.8
conda activate annopro
pip install .
Code Usage
Use it as a terminal command. For all parameters, type annopro -h
annopro -i test_proteins.fasta -o output
Use it as a python executable package
python -m annopro -i test_proteins.fasta -o output
Use it as a library to integrated with your project.
from annopro import main
main("test_proteins.fasta", "output")
The result is displayed in the ./output/bp(cc,mf)_result.csv.
Notice: if you use
annopro for the first time, annopro will
automatically download required resources when they are used (lazy download mechanism)
